Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
bigR_1Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (102 aa)    
Predicted Functional Partners:
ANP67237.1
Siderophore ferric iron reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.732
ANP63535.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.721
nhaR
Transcriptional activator NhaR; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.
  
    0.680
thiE
Thiamine phosphate synthase; Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.652
thiE-2
Thiamine-phosphate diphosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family.
      
 0.652
ANP66170.1
Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.613
ANP66833.1
Phasin family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.609
hlyA
Calcium-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.603
tolC
Outer membrane channel protein TolC; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.504
copA
Copper-translocating P-type ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.473
Your Current Organism:
Vibrio alginolyticus
NCBI taxonomy Id: 663
Other names: ATCC 17749, Beneckea alginolytica, CAIM 516, CCUG 13445, CCUG 16315, CCUG 4989, CIP 103336, CIP 75.3, DSM 2171, IFO 15630, LMG 4409, LMG:4409, NBRC 15630, NCCB 71013, NCCB 77003, NCTC 12160, Oceanomonas alginolytica, Pseudomonas creosotensis, V. alginolyticus, Vibrio sp. PeIg0901
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