smrA_1 protein (Vibrio alginolyticus) - STRING interaction network

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[Homology]

Score

smrA_1

DNA mismatch repair protein MutS; Derived by automated computational analysis using gene prediction method: Protein Homology. (193 aa)

Predicted Functional Partners:

rluF

0.748

rpmF

0.733

rpsA

0.702

ANP65973.1

0.677

rpsG

0.676

rpsJ

0.672

rpsT

0.665

rpmE

0.662

rplC

0.662

rplD

0.662

Your Current Organism:

Vibrio alginolyticus

NCBI taxonomy Id: 663
Other names: ATCC 17749, Beneckea alginolytica, CAIM 516, CCUG 13445, CCUG 16315, CCUG 4989, CIP 103336, CIP 75.3, DSM 2171, IFO 15630, LMG 4409, LMG:4409, NBRC 15630, NCCB 71013, NCCB 77003, NCTC 12160, Oceanomonas alginolytica, Pseudomonas creosotensis, V. alginolyticus, Vibrio sp. PeIg0901

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANP65973.1	rplC	BAU10_13740	BAU10_00315	30S ribosomal protein S12; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.998
ANP65973.1	rplD	BAU10_13740	BAU10_00320	30S ribosomal protein S12; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.999
ANP65973.1	rpmE	BAU10_13740	BAU10_00305	30S ribosomal protein S12; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L31; Binds the 23S rRNA.	0.971
ANP65973.1	rpmF	BAU10_13740	BAU10_09435	30S ribosomal protein S12; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L32; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL32 family.	0.994
ANP65973.1	rpsA	BAU10_13740	BAU10_09305	30S ribosomal protein S12; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.	0.992
ANP65973.1	rpsG	BAU10_13740	BAU10_13735	30S ribosomal protein S12; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.999
ANP65973.1	rpsJ	BAU10_13740	BAU10_00310	30S ribosomal protein S12; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.999
ANP65973.1	rpsT	BAU10_13740	BAU10_01610	30S ribosomal protein S12; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.989
ANP65973.1	smrA_1	BAU10_13740	BAU10_02860	30S ribosomal protein S12; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA mismatch repair protein MutS; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.677
rluF	smrA_1	BAU10_02855	BAU10_02860	23S rRNA pseudouridine synthase F; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the pseudouridine synthase RsuA family.	DNA mismatch repair protein MutS; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.748
rplC	ANP65973.1	BAU10_00315	BAU10_13740	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	30S ribosomal protein S12; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
rplC	rplD	BAU10_00315	BAU10_00320	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.999
rplC	rpmE	BAU10_00315	BAU10_00305	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	50S ribosomal protein L31; Binds the 23S rRNA.	0.959
rplC	rpmF	BAU10_00315	BAU10_09435	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	50S ribosomal protein L32; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL32 family.	0.990
rplC	rpsA	BAU10_00315	BAU10_09305	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.	0.990
rplC	rpsG	BAU10_00315	BAU10_13735	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.998
rplC	rpsJ	BAU10_00315	BAU10_00310	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.999
rplC	rpsT	BAU10_00315	BAU10_01610	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.978
rplC	smrA_1	BAU10_00315	BAU10_02860	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	DNA mismatch repair protein MutS; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.662
rplD	ANP65973.1	BAU10_00320	BAU10_13740	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	30S ribosomal protein S12; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999

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