STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANP64282.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (88 aa)    
Predicted Functional Partners:
ANP64283.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.588
ANP66884.1
Type VI secretion protein VgrG; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.574
ANP67272.1
Type IV secretion protein Rhs; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.574
rpsO
30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
    
   0.527
ANP63493.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.468
ANP66441.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.468
ANP65562.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.468
ANP65955.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.468
ilvH
Acetolactate synthase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.452
Your Current Organism:
Vibrio alginolyticus
NCBI taxonomy Id: 663
Other names: ATCC 17749, Beneckea alginolytica, CAIM 516, CCUG 13445, CCUG 16315, CCUG 4989, CIP 103336, CIP 75.3, DSM 2171, IFO 15630, LMG 4409, LMG:4409, NBRC 15630, NCCB 71013, NCCB 77003, NCTC 12160, Oceanomonas alginolytica, Pseudomonas creosotensis, V. alginolyticus, Vibrio sp. PeIg0901
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