Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ybbH_1Transcriptional regulator HexR; Derived by automated computational analysis using gene prediction method: Protein Homology. (284 aa)    
Predicted Functional Partners:
ANP64459.1
Glutamate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.677
ANP64460.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.601
ANP66521.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.579
ANP64461.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.560
edd
Phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family.
 
   
 0.556
ANP66269.1
Ketohydroxyglutarate aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.554
ANP64462.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.550
ANP67659.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.506
ptsG_1
PTS glucose transporter subunit IIBC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.440
murQ
N-acetylmuramic acid 6-phosphate etherase; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate. Together with AnmK, is also required for the utilization of anhydro-N-acetylmuramic acid (anhMurNAc) either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling.
 
  
 0.436
Your Current Organism:
Vibrio alginolyticus
NCBI taxonomy Id: 663
Other names: ATCC 17749, Beneckea alginolytica, CAIM 516, CCUG 13445, CCUG 16315, CCUG 4989, CIP 103336, CIP 75.3, DSM 2171, IFO 15630, LMG 4409, LMG:4409, NBRC 15630, NCCB 71013, NCCB 77003, NCTC 12160, Oceanomonas alginolytica, Pseudomonas creosotensis, V. alginolyticus, Vibrio sp. PeIg0901
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