Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ANP64769.1Type IV secretion protein Rhs; Derived by automated computational analysis using gene prediction method: Protein Homology. (1459 aa)    
Predicted Functional Partners:
ANP67950.1
Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.828
ANP67108.1
Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.822
ANP67583.1
Undecaprenyl-phosphate glucose phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.806
ANP64770.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.738
ANP66146.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0276 family.
  
    0.666
ANP64013.1
Co-chaperone YbbN; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.661
trxA_2
Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thioredoxin family.
    
   0.661
trxC
Thioredoxin TrxC; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.661
ANP64920.1
EscD/YscD/HrpQ family type III secretion system inner membrane ring protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.645
ANP66879.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.625
Your Current Organism:
Vibrio alginolyticus
NCBI taxonomy Id: 663
Other names: ATCC 17749, Beneckea alginolytica, CAIM 516, CCUG 13445, CCUG 16315, CCUG 4989, CIP 103336, CIP 75.3, DSM 2171, IFO 15630, LMG 4409, LMG:4409, NBRC 15630, NCCB 71013, NCCB 77003, NCTC 12160, Oceanomonas alginolytica, Pseudomonas creosotensis, V. alginolyticus, Vibrio sp. PeIg0901
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