Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ANP64890.1Type III secretion system regulator LcrR; Derived by automated computational analysis using gene prediction method: Protein Homology. (137 aa)    
Predicted Functional Partners:
ANP64896.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.950
ANP64891.1
EscV/YscV/HrcV family type III secretion system export apparatus protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.930
sycN
Type III secretion chaperone SycN; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.913
ANP64898.1
Type III secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.839
vscX
Type III secretion protein, YscX family; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.829
ANP64889.1
Type III secretion protein LcrG; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.826
ssaR
EscR/YscR/HrcR family type III secretion system export apparatus protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.826
vscY
Translocation protein Y; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.809
tyeA
SepL/TyeA/HrpJ family type III secretion system gatekeeper; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.809
ANP64903.1
EscT/YscT/HrcT family type III secretion system export apparatus protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.788
Your Current Organism:
Vibrio alginolyticus
NCBI taxonomy Id: 663
Other names: ATCC 17749, Beneckea alginolytica, CAIM 516, CCUG 13445, CCUG 16315, CCUG 4989, CIP 103336, CIP 75.3, DSM 2171, IFO 15630, LMG 4409, LMG:4409, NBRC 15630, NCCB 71013, NCCB 77003, NCTC 12160, Oceanomonas alginolytica, Pseudomonas creosotensis, V. alginolyticus, Vibrio sp. PeIg0901
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