Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
vscYTranslocation protein Y; Derived by automated computational analysis using gene prediction method: Protein Homology. (113 aa)    
Predicted Functional Partners:
vscX
Type III secretion protein, YscX family; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.845
ANP64891.1
EscV/YscV/HrcV family type III secretion system export apparatus protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.828
sycN
Type III secretion chaperone SycN; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.828
tyeA
SepL/TyeA/HrpJ family type III secretion system gatekeeper; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.828
ANP64896.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.828
ANP64890.1
Type III secretion system regulator LcrR; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.809
ANP64919.1
EscE/YscE/SsaE family type III secretion system needle protein co-chaperone; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.721
nirD
Nitrite reductase small subunit; Involved in reducing nitrite to ammonium to detoxify nitrite accumulation in anaerobic nitrate-respiring cells and regenerate NAD+; bounds to NirB, the cytoplasmic subunit, whose expression is induced at high nitrate concentrations; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.721
vxsC
Exoenzyme S synthesis protein C; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.611
exsA
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.608
Your Current Organism:
Vibrio alginolyticus
NCBI taxonomy Id: 663
Other names: ATCC 17749, Beneckea alginolytica, CAIM 516, CCUG 13445, CCUG 16315, CCUG 4989, CIP 103336, CIP 75.3, DSM 2171, IFO 15630, LMG 4409, LMG:4409, NBRC 15630, NCCB 71013, NCCB 77003, NCTC 12160, Oceanomonas alginolytica, Pseudomonas creosotensis, V. alginolyticus, Vibrio sp. PeIg0901
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