STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANP64900.1Type III secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (322 aa)    
Predicted Functional Partners:
ANP64903.1
EscT/YscT/HrcT family type III secretion system export apparatus protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.988
vscS
EscS/YscS/HrcS family type III secretion system export apparatus protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.986
fliI
EscN/YscN/HrcN family type III secretion system ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.984
ANP64891.1
EscV/YscV/HrcV family type III secretion system export apparatus protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.977
ssaR
EscR/YscR/HrcR family type III secretion system export apparatus protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.974
ANP66464.1
Chemotaxis protein CheC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.973
ANP64898.1
Type III secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.957
vscL
Type III secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.957
fliM
Flagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
  
 
 0.954
ANP64904.1
EscU/YscU/HrcU family type III secretion system export apparatus switch protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.948
Your Current Organism:
Vibrio alginolyticus
NCBI taxonomy Id: 663
Other names: ATCC 17749, Beneckea alginolytica, CAIM 516, CCUG 13445, CCUG 16315, CCUG 4989, CIP 103336, CIP 75.3, DSM 2171, IFO 15630, LMG 4409, LMG:4409, NBRC 15630, NCCB 71013, NCCB 77003, NCTC 12160, Oceanomonas alginolytica, Pseudomonas creosotensis, V. alginolyticus, Vibrio sp. PeIg0901
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