Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ANP64910.1Effector protein; Secreted into the host cell cytosol by the type III secretion system and induces DNA fragmentation in macrophages; Derived by automated computational analysis using gene prediction method: Protein Homology. (387 aa)    
Predicted Functional Partners:
ANP64911.1
Type III chaperone; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.783
vscL
Type III secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.453
vscK
Type III secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.453
vscJ
EscJ/YscJ/HrcJ family type III secretion inner membrane ring protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.453
vscI
EscI/YscI/HrpB family type III secretion system inner rod protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.453
vscH
Type III secretion effector, YopR family; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.453
vscG
Type III secretion protein, YscG family; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.453
vscF
EscF/YscF/HrpA family type III secretion system needle major subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.453
ANP64919.1
EscE/YscE/SsaE family type III secretion system needle protein co-chaperone; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.430
ANP64920.1
EscD/YscD/HrpQ family type III secretion system inner membrane ring protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.430
Your Current Organism:
Vibrio alginolyticus
NCBI taxonomy Id: 663
Other names: ATCC 17749, Beneckea alginolytica, CAIM 516, CCUG 13445, CCUG 16315, CCUG 4989, CIP 103336, CIP 75.3, DSM 2171, IFO 15630, LMG 4409, LMG:4409, NBRC 15630, NCCB 71013, NCCB 77003, NCTC 12160, Oceanomonas alginolytica, Pseudomonas creosotensis, V. alginolyticus, Vibrio sp. PeIg0901
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