Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
vscIEscI/YscI/HrpB family type III secretion system inner rod protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (114 aa)    
Predicted Functional Partners:
vscF
EscF/YscF/HrpA family type III secretion system needle major subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.992
vscL
Type III secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.973
vscJ
EscJ/YscJ/HrcJ family type III secretion inner membrane ring protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.972
vscG
Type III secretion protein, YscG family; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.966
vcrH
CesD/SycD/LcrH family type III secretion system chaperone; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.956
vscK
Type III secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.934
ANP64920.1
EscD/YscD/HrpQ family type III secretion system inner membrane ring protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.869
vscS
EscS/YscS/HrcS family type III secretion system export apparatus protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.861
ANP64888.1
Type III secretion cytoplasmic LcrG inhibitor; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.857
ANP64885.1
Translocator protein PopD; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.838
Your Current Organism:
Vibrio alginolyticus
NCBI taxonomy Id: 663
Other names: ATCC 17749, Beneckea alginolytica, CAIM 516, CCUG 13445, CCUG 16315, CCUG 4989, CIP 103336, CIP 75.3, DSM 2171, IFO 15630, LMG 4409, LMG:4409, NBRC 15630, NCCB 71013, NCCB 77003, NCTC 12160, Oceanomonas alginolytica, Pseudomonas creosotensis, V. alginolyticus, Vibrio sp. PeIg0901
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