STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vxsCExoenzyme S synthesis protein C; Derived by automated computational analysis using gene prediction method: Protein Homology. (148 aa)    
Predicted Functional Partners:
ANP64927.1
Type III secretion regulator ExsE; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.786
ANP64886.1
Translocator protein PopB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.758
exsA
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.645
vcrH
CesD/SycD/LcrH family type III secretion system chaperone; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.643
vscY
Translocation protein Y; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.643
ANP64919.1
EscE/YscE/SsaE family type III secretion system needle protein co-chaperone; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.643
vscL
Type III secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.642
sycN
Type III secretion chaperone SycN; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.633
ANP64885.1
Translocator protein PopD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.627
ANP64888.1
Type III secretion cytoplasmic LcrG inhibitor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.607
Your Current Organism:
Vibrio alginolyticus
NCBI taxonomy Id: 663
Other names: ATCC 17749, Beneckea alginolytica, CAIM 516, CCUG 13445, CCUG 16315, CCUG 4989, CIP 103336, CIP 75.3, DSM 2171, IFO 15630, LMG 4409, LMG:4409, NBRC 15630, NCCB 71013, NCCB 77003, NCTC 12160, Oceanomonas alginolytica, Pseudomonas creosotensis, V. alginolyticus, Vibrio sp. PeIg0901
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.