STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANP65440.1Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (168 aa)    
Predicted Functional Partners:
ANP67854.1
GNAT family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.669
ANP67234.1
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.562
ANP65097.1
Ubiquitin--protein ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.542
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.473
speG_2
Spermidine acetyltransferase; Catalyzes the formation of N(1)- and N(8)-acetylspermidine from spermidine; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.461
ANP66632.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.419
deaA
Dehydrogenase; Specifically catalyzes the degradation of N,N'- diacetylchitobiose. Key enzyme in the chitin catabolic cascade.
 
     0.417
ANP65106.1
Nucleotidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.416
ydaF_4
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.405
ANP64728.1
Glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.402
Your Current Organism:
Vibrio alginolyticus
NCBI taxonomy Id: 663
Other names: ATCC 17749, Beneckea alginolytica, CAIM 516, CCUG 13445, CCUG 16315, CCUG 4989, CIP 103336, CIP 75.3, DSM 2171, IFO 15630, LMG 4409, LMG:4409, NBRC 15630, NCCB 71013, NCCB 77003, NCTC 12160, Oceanomonas alginolytica, Pseudomonas creosotensis, V. alginolyticus, Vibrio sp. PeIg0901
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