Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
slyA_1MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (140 aa)    
Predicted Functional Partners:
ANP64728.1
Glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.560
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
     
 0.548
nlpI
Lipoprotein NlpI; May be involved in cell division.
       0.532
ANP66996.1
RTX toxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.521
ANP65218.1
Prepilin peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.500
ANP66485.1
Histidine phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.493
vmrA
MATE family efflux transporter; Sodium/drug antiporter; functions as a Na(+)-driven Na(+)/drug antiporter; member of multidrug and toxic compound extrusion (MATE) family; extrudes acriflavines and other compounds by utilizing the sodium gradient; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.487
ANP67519.1
Peptidase M9; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.471
ANP66652.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.457
ompV
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.450
Your Current Organism:
Vibrio alginolyticus
NCBI taxonomy Id: 663
Other names: ATCC 17749, Beneckea alginolytica, CAIM 516, CCUG 13445, CCUG 16315, CCUG 4989, CIP 103336, CIP 75.3, DSM 2171, IFO 15630, LMG 4409, LMG:4409, NBRC 15630, NCCB 71013, NCCB 77003, NCTC 12160, Oceanomonas alginolytica, Pseudomonas creosotensis, V. alginolyticus, Vibrio sp. PeIg0901
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