Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
prsE_3Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (446 aa)    
Predicted Functional Partners:
prsD
Protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.979
ANP64667.1
Peptidase C39; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.946
apxIB_2
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.945
ANP67434.1
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.894
bepC_2
Calcium-binding protein; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.850
hlyA
Calcium-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.850
bepC_3
Agglutination protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.847
ANP64669.1
Agglutination protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.846
ANP67435.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.798
apxIA
Hcalcium-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.750
Your Current Organism:
Vibrio alginolyticus
NCBI taxonomy Id: 663
Other names: ATCC 17749, Beneckea alginolytica, CAIM 516, CCUG 13445, CCUG 16315, CCUG 4989, CIP 103336, CIP 75.3, DSM 2171, IFO 15630, LMG 4409, LMG:4409, NBRC 15630, NCCB 71013, NCCB 77003, NCTC 12160, Oceanomonas alginolytica, Pseudomonas creosotensis, V. alginolyticus, Vibrio sp. PeIg0901
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