Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hlyACalcium-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (196 aa)    
Predicted Functional Partners:
prsD
Protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.865
prsE_3
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.850
ANP64836.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.752
apxIB_2
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.747
tlh
Thermolabile hemolysin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.745
ANP64667.1
Peptidase C39; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.732
ANP66996.1
RTX toxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.696
flaC
Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
   
 
 0.692
ANP67434.1
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.675
ANP67431.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.674
Your Current Organism:
Vibrio alginolyticus
NCBI taxonomy Id: 663
Other names: ATCC 17749, Beneckea alginolytica, CAIM 516, CCUG 13445, CCUG 16315, CCUG 4989, CIP 103336, CIP 75.3, DSM 2171, IFO 15630, LMG 4409, LMG:4409, NBRC 15630, NCCB 71013, NCCB 77003, NCTC 12160, Oceanomonas alginolytica, Pseudomonas creosotensis, V. alginolyticus, Vibrio sp. PeIg0901
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