STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lafLFlagellar protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. (166 aa)    
Predicted Functional Partners:
ANP63997.1
Flagellar rod assembly protein/muramidase FlgJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.930
ANP67725.1
Flagellar hook-length control protein FliK; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.926
lafS
RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family.
  
  
 0.917
ANP67728.1
Flagellar motor stator protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.915
ANP67723.1
Flagellar export chaperone FliS; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.898
ANP67729.1
Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.895
ANP65357.1
Flagellar biosynthetic protein FliO; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.883
ANP66464.1
Chemotaxis protein CheC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.874
fliM
Flagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
  
 
 0.870
ANP67722.1
Flagellar hook-associated protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
  
  
 0.866
Your Current Organism:
Vibrio alginolyticus
NCBI taxonomy Id: 663
Other names: ATCC 17749, Beneckea alginolytica, CAIM 516, CCUG 13445, CCUG 16315, CCUG 4989, CIP 103336, CIP 75.3, DSM 2171, IFO 15630, LMG 4409, LMG:4409, NBRC 15630, NCCB 71013, NCCB 77003, NCTC 12160, Oceanomonas alginolytica, Pseudomonas creosotensis, V. alginolyticus, Vibrio sp. PeIg0901
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