STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANP67837.1Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (678 aa)    
Predicted Functional Partners:
ANP67836.1
Ligand-gated channel; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
0.763
ANP66872.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.642
ANP67840.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.620
ANP67839.1
Siderophore synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.577
ANP67841.1
Aconitase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.573
ANP67156.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.567
ANP67834.1
Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.560
fecD
Iron-dicitrate transporter subunit FecD; Ferric citrate binds FecA and is transported across the outer membrane while transmits a signal across the cytoplasmic membrane protein FecR. FecR transmits a signal across the membrane and activates the cytoplasmic FecI that directs the RNA polymerase to express the fecABCDE operon (which encodes the ferric citrate outer membrane receptor and the ferric citrate ABC transporter), as well as fecIR. FecD is one of two (along with FecC) integral membrane protein components of the iron dicitrate ABC transporter; Derived by automated computational an [...]
 
  
 0.559
btuB_1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.557
BAU10_23150
Chemotaxis protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.552
Your Current Organism:
Vibrio alginolyticus
NCBI taxonomy Id: 663
Other names: ATCC 17749, Beneckea alginolytica, CAIM 516, CCUG 13445, CCUG 16315, CCUG 4989, CIP 103336, CIP 75.3, DSM 2171, IFO 15630, LMG 4409, LMG:4409, NBRC 15630, NCCB 71013, NCCB 77003, NCTC 12160, Oceanomonas alginolytica, Pseudomonas creosotensis, V. alginolyticus, Vibrio sp. PeIg0901
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