STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU26644.1KEGG: cyh:Cyan8802_1005 protein of unknown function DUF470. (577 aa)    
Predicted Functional Partners:
lysS
KEGG: cce:Ccel_0396 lysyl-tRNA synthetase; TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; Belongs to the class-II aminoacyl-tRNA synthetase family.
 
 
  
 0.679
msrB
methionine-R-sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
     
 0.596
ADU25853.1
KEGG: cbe:Cbei_0250 amino acid adenylation domain-containing protein; TIGRFAM: amino acid adenylation domain protein; SagB-type dehydrogenase domain; PFAM: AMP-dependent synthetase and ligase; Beta-ketoacyl synthase; KR domain protein; phosphopantetheine-binding; condensation domain protein; Non-ribosomal peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
  
   
 0.492
ADU26643.1
PFAM: Peptidase M23; KEGG: cce:Ccel_0884 peptidase M23.
  
  
 0.469
ADU26734.1
PFAM: protein of unknown function DUF1003; KEGG: cbb:CLD_0468 hypothetical protein.
 
     0.453
ADU27430.1
SMART: DEAD-like helicase; KEGG: efa:EF2307 hypothetical protein.
   
    0.408
Your Current Organism:
Ethanoligenens harbinense
NCBI taxonomy Id: 663278
Other names: E. harbinense YUAN-3, Ethanoligenens harbinense YUAN-3, Ethanoligenens harbinense str. YUAN-3, Ethanoligenens harbinense strain YUAN-3
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