STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU26664.1PFAM: protein of unknown function DUF1292; KEGG: cth:Cthe_0154 hypothetical protein; Belongs to the UPF0473 family. (106 aa)    
Predicted Functional Partners:
ADU25612.1
Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
  
    0.768
ADU27486.1
PFAM: protein of unknown function DUF965; KEGG: drm:Dred_0773 hypothetical protein; Belongs to the UPF0297 family.
  
  
 0.639
ADU27692.1
PFAM: Methicillin resistance protein; KEGG: mta:Moth_2408 methicillin resistance protein.
  
     0.581
ADU27008.1
PFAM: GCN5-related N-acetyltransferase; KEGG: bfs:BF0415 acetyltransferase.
  
     0.487
ADU25745.1
KEGG: cth:Cthe_1861 CdaR family transcriptional regulator.
  
     0.463
ispH
Hydroxymethylbutenyl pyrophosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
  
     0.459
ADU26264.1
KEGG: aoe:Clos_1406 hypothetical protein.
  
     0.427
ADU25786.1
Helix-turn-helix domain protein; KEGG: ate:Athe_1027 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
  
     0.416
ADU26663.1
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cbh:CLC_2221 short chain dehydrogenase/reductase family oxidoreductase.
       0.413
ADU25807.1
KEGG: dau:Daud_1981 xylose isomerase domain-containing protein; PFAM: Xylose isomerase domain-containing protein TIM barrel; SMART: AP endonuclease family 2.
  
     0.401
Your Current Organism:
Ethanoligenens harbinense
NCBI taxonomy Id: 663278
Other names: E. harbinense YUAN-3, Ethanoligenens harbinense YUAN-3, Ethanoligenens harbinense str. YUAN-3, Ethanoligenens harbinense strain YUAN-3
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