STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU26738.1KEGG: tit:Thit_0917 sporulation protein YqfD; TIGRFAM: sporulation protein YqfD; PFAM: stage IV sporulation YqfD. (391 aa)    
Predicted Functional Partners:
ADU26737.1
KEGG: cth:Cthe_1073 hypothetical protein.
  
  
 0.960
ADU26736.1
PFAM: nucleoside recognition domain protein; KEGG: hmo:HM1_2156 hypothetical protein.
 
   
 0.899
ADU25936.1
KEGG: tmt:Tmath_2056 sporulation protein YabP; TIGRFAM: sporulation protein YabP; PFAM: YabP family protein.
 
   
 0.824
ADU27671.1
KEGG: pth:PTH_0185 hypothetical protein; TIGRFAM: stage II sporulation protein R; PFAM: Sporulation stage II protein R.
  
  
 0.805
ADU27164.1
KEGG: amt:Amet_2872 peptidase U4, sporulation factor SpoIIGA; TIGRFAM: sigma-E processing peptidase SpoIIGA; PFAM: peptidase U4 sporulation factor SpoIIGA.
  
   
 0.801
spoIIAB
Anti-sigma regulatory factor, serine/threonine protein kinase; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.
  
   
 0.789
ADU26750.1
KEGG: sth:STH1862 stage III sporulation protein AA; TIGRFAM: stage III sporulation protein AA; SMART: AAA ATPase.
  
    0.787
ADU27269.1
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
  
 0.786
ADU26285.1
SMART: PDZ/DHR/GLGF domain protein; TIGRFAM: stage IV sporulation protein B; KEGG: cth:Cthe_0813 SpoIVB peptidase; PFAM: peptidase S55 SpoIVB; PDZ/DHR/GLGF domain protein.
  
     0.774
ADU26752.1
TIGRFAM: stage III sporulation protein AC; KEGG: amt:Amet_2494 stage III sporulation AC family protein.
  
     0.773
Your Current Organism:
Ethanoligenens harbinense
NCBI taxonomy Id: 663278
Other names: E. harbinense YUAN-3, Ethanoligenens harbinense YUAN-3, Ethanoligenens harbinense str. YUAN-3, Ethanoligenens harbinense strain YUAN-3
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