Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
REG_1007Putative phage tail protein; N terminal extension; similar to AA sequence GI 149917497. (158 aa)    
Predicted Functional Partners:
REG_1009
Hypothetical protein; N terminal extension; COG1652; similar to AA sequence GI 149917495.
 
   0.994
REG_1011
Putative phage lysozyme; COG3628; similar to AA sequence GI 149917492.
 
   0.994
REG_1006
Putative phage tail protein; N terminal extension; similar to AA sequence GI 37525646.
 
   0.991
REG_1005
Putative phage tail sheath protein; N terminal extension; COG3497; similar to AA sequence GI 124001995.
 
 
 0.987
REG_1016
Hypothetical protein; Similar to AA sequence GI 90020693.
 
 
 
 0.981
REG_1013
Hypothetical protein; Similar to AA sequence GI 124002005.
 
 
 
 0.970
REG_1010
Putative phage protein; Similar to Rhs element Vgr; COG3500; similar to AA sequence GI 17230812.
 
    0.963
REG_1019
Hypothetical protein; Similar to AA sequence GI 186681854.
 
 
   0.950
REG_1017
Hypothetical protein; Similar to AA sequence GI 91794347.
 
     0.849
REG_1018
ATPase domain-containing hypothetical protein; COG0464; similar to AA sequence GI 77165350.
 
     0.833
Your Current Organism:
Regiella insecticola
NCBI taxonomy Id: 663321
Other names: C. Regiella insecticola LSR1, Candidatus Regiella insecticola LSR1, Candidatus Regiella insecticola str. LSR1, Candidatus Regiella insecticola strain LSR1
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