STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
REG_1008Hypothetical protein. (92 aa)    
Predicted Functional Partners:
REG_1007
Putative phage tail protein; N terminal extension; similar to AA sequence GI 149917497.
       0.773
REG_1009
Hypothetical protein; N terminal extension; COG1652; similar to AA sequence GI 149917495.
       0.773
REG_1010
Putative phage protein; Similar to Rhs element Vgr; COG3500; similar to AA sequence GI 17230812.
       0.773
REG_1011
Putative phage lysozyme; COG3628; similar to AA sequence GI 149917492.
       0.746
REG_1006
Putative phage tail protein; N terminal extension; similar to AA sequence GI 37525646.
       0.701
REG_1005
Putative phage tail sheath protein; N terminal extension; COG3497; similar to AA sequence GI 124001995.
       0.507
REG_1012
Hypothetical phage protein; Similar to AA sequence GI 186681870.
       0.409
Your Current Organism:
Regiella insecticola
NCBI taxonomy Id: 663321
Other names: C. Regiella insecticola LSR1, Candidatus Regiella insecticola LSR1, Candidatus Regiella insecticola str. LSR1, Candidatus Regiella insecticola strain LSR1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.