STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dapADihydrodipicolinate synthase; COG0329; similar to AA sequence EcoGene EG10205; similar to AA sequence GI 77974617. (316 aa)    
Predicted Functional Partners:
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
 
 
 0.996
asd
Aspartate-semialdehyde dehydrogenase; COG0136; similar to AA sequence EcoGene EG10088; similar to AA sequence GI 123444192; Belongs to the aspartate-semialdehyde dehydrogenase family.
  
 
 0.983
thrA
Fused aspartokinase I and homoserine dehydrogenase I; COG0527; similar to AA sequence EcoGene EG10998; similar to AA sequence GI 123440965.
  
 
 0.981
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
 
 
 0.830
nlpB
Lipoprotein; COG3317; similar to AA sequence EcoGene EG10658; similar to AA sequence GI 22125317.
  
    0.779
REG_0392
Predicted aminotransferase; COG0436; similar to AA sequence EcoGene EG14101; similar to AA sequence GI 21958421.
  
 
 0.723
REG_1214
Chorismate mutase type II; COG1605; similar to AA sequence GI 157370316.
  
  
 0.721
dapE
N-succinyl-diaminopimelate deacylase; COG0624; similar to AA sequence EcoGene EG10208; similar to AA sequence GI 22125325.
    
 0.713
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
   
 
 0.692
purL
Phosphoribosylformylglycinamide synthetase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.
  
  
 0.685
Your Current Organism:
Regiella insecticola
NCBI taxonomy Id: 663321
Other names: C. Regiella insecticola LSR1, Candidatus Regiella insecticola LSR1, Candidatus Regiella insecticola str. LSR1, Candidatus Regiella insecticola strain LSR1
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