STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
potGATP-binding component of putrescine ABC transporter; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system. (374 aa)    
Predicted Functional Partners:
potH
Membrane component 1 of putrescine ABC transporter; COG1176; similar to AA sequence EcoGene EG11631; similar to AA sequence GI 152969444.
 0.994
potI
Membrane component 2 of putrescine ABC transporter; COG1177; similar to AA sequence EcoGene EG11632; similar to AA sequence GI 77976849.
 
 0.991
potF
Periplasmic-binding component of putrescine ABC transporter; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
 
 
 0.976
REG_1566
ATP-binding component of putative ABC transport protein; COG2274; similar to AA sequence GI 77958144.
 
    
0.905
sapD
Putative antimicrobial peptide transporter subunit; Corrected polynucleotide track (1), low coverage; COG4170; similar to AA sequence EcoGene EG12304; similar to AA sequence GI 77959168; Belongs to the ABC transporter superfamily.
 
 
   
0.900
REG_1906
Hypothetical protein; Corrected polynucleotide tracks (3); COG0658; similar to AA sequence GI 77979233.
  
  
 0.623
msbA
Fused lipid transporter subunits of ABC superfamily: membrane component/ATP-binding component; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
 
 
   
0.559
mlaE
Permease component of phospholipid ABC transporter; Involved in resistance to organic solvents; COG0767; similar to AA sequence EcoGene EG12800; similar to AA sequence GI 22124065.
     
  0.556
REG_1835
ABC transporter-like protein; COG3842; similar to AA sequence EcoGene EG10749; similar to AA sequence GI 104780617.
  
  
 
0.506
REG_1671
Hypothetical protein.
       0.450
Your Current Organism:
Regiella insecticola
NCBI taxonomy Id: 663321
Other names: C. Regiella insecticola LSR1, Candidatus Regiella insecticola LSR1, Candidatus Regiella insecticola str. LSR1, Candidatus Regiella insecticola strain LSR1
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