STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
REG_1985Putative phage portal protein; COG5518; similar to AA sequence GI 170024550. (51 aa)    
Predicted Functional Partners:
REG_0766
Putative phage tail protein; Similar to AA sequence GI 77973284.
 
    0.969
REG_1980
Putative phage replication protein; Similar to AA sequence GI 51597448.
  
    0.944
REG_1847
Putative phage baseplate protein; Similar to AA sequence GI 213019871.
 
    0.851
REG_1960
Putative transposase; Corrected polynucleotide track (1); COG1961; similar to AA sequence GI 13096079.
   
    0.757
REG_0170
Phage-related exonuclease; Similar to AA sequence GI 223990485.
   
    0.749
expI
N-acyl-L-homoserine lactone synthetase invovled in quorum sensing; COG3916; similar to AA sequence GI 157704377.
  
     0.634
REG_1601
Putative resolvase; COG1961; similar to AA sequence GI 119640087.
   
    0.598
REG_1723
Phage lysozome; COG3772; similar to AA sequence GI 212712333.
 
    0.540
REG_0379
Hypothetical phage protein; Similar to AA sequence EcoGene EG12779; similar to AA sequence GI 108806062.
  
    0.530
REG_1030
Putative phage lysozyme; N terminal extension; COG3772; similar to AA sequence EcoGene EG13635; similar to AA sequence GI 183598713.
 
    0.530
Your Current Organism:
Regiella insecticola
NCBI taxonomy Id: 663321
Other names: C. Regiella insecticola LSR1, Candidatus Regiella insecticola LSR1, Candidatus Regiella insecticola str. LSR1, Candidatus Regiella insecticola strain LSR1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.