STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
REG_2003Putative acetyltransferase; Similar to AA sequence GI 188533277. (150 aa)    
Predicted Functional Partners:
REG_2002
Hypothetical protein.
       0.709
dapE
N-succinyl-diaminopimelate deacylase; COG0624; similar to AA sequence EcoGene EG10208; similar to AA sequence GI 22125325.
  
 
 0.619
thrA
Fused aspartokinase I and homoserine dehydrogenase I; COG0527; similar to AA sequence EcoGene EG10998; similar to AA sequence GI 123440965.
     
 0.508
aspC
PLP-dependent aspartate aminotransferase; COG1448; similar to AA sequence EcoGene EG10096; similar to AA sequence GI 218548444.
     
 0.500
purB
Adenylosuccinate lyase; COG0015; similar to AA sequence EcoGene EG11314; similar to AA sequence GI 77959454; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
    
  0.489
putA
Trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
      
 0.428
birA
biotin-(acetyl-CoA carboxylase) ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon.
       0.408
adk
Adenylate kinase; COG0563; similar to AA sequence EcoGene EG10032; similar to AA sequence GI 77979352.
     
 0.408
nadE
Putative NAD synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
 
     0.401
Your Current Organism:
Regiella insecticola
NCBI taxonomy Id: 663321
Other names: C. Regiella insecticola LSR1, Candidatus Regiella insecticola LSR1, Candidatus Regiella insecticola str. LSR1, Candidatus Regiella insecticola strain LSR1
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