STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cydB-2Cytochrome d terminal oxidase subunit II; COG1294; similar to AA sequence EcoGene EG10174; similar to AA sequence GI 123443152. (132 aa)    
Predicted Functional Partners:
cydB
Cytochrome bd-type quinol oxidase subunit 2; C terminal truncation; COG1294; similar to AA sequence EcoGene EG10174; similar to AA sequence GI 22126938.
 
     0.976
cydD
Cysteine/glutathione ABC transporter membrane/ATP-binding component; COG4988; similar to AA sequence EcoGene EG11405; similar to AA sequence GI 77958334.
 
  
 0.892
cydC
Cysteine/glutathione ABC transporter membrane/ATP-binding component; COG4987; similar to AA sequence EcoGene EG10012; similar to AA sequence GI 22126681.
 
  
 0.808
REG_2014
Hypothetical protein.
       0.693
nuoC
NADH:ubiquinone oxidoreductase, chain C,D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the C-terminal section; belongs to the complex I 49 kDa subunit family.
   
  
 0.436
hmp_1
Hemoglobin-like flavoprotein; Fused with hmp_2 in E. coli; COG1017; similar to AA sequence EcoGene EG10456; similar to AA sequence GI 123441393; Belongs to the globin family.
   
  
 0.429
Your Current Organism:
Regiella insecticola
NCBI taxonomy Id: 663321
Other names: C. Regiella insecticola LSR1, Candidatus Regiella insecticola LSR1, Candidatus Regiella insecticola str. LSR1, Candidatus Regiella insecticola strain LSR1
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