STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARB_06039RBR-type E3 ubiquitin transferase. (417 aa)    
Predicted Functional Partners:
ARB_01653
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
 0.642
ARB_03731
Polyubiquitin UbiD/Ubi4, putative.
   
 0.459
ARB_05393
Ubiquitin-like domain-containing protein.
    
 0.444
ARB_05948
Uncharacterized protein.
    
 0.403
ARB_07477
RBR-type E3 ubiquitin transferase.
    
 0.403
Your Current Organism:
Trichophyton benhamiae
NCBI taxonomy Id: 663331
Other names: Arthroderma benhamiae CBS 112371, T. benhamiae CBS 112371, Trichophyton benhamiae CBS 112371
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.