STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000718305_04938Unannotated protein. (663 aa)    
Predicted Functional Partners:
GCA_000718305_05635
Unannotated protein.
 
     0.774
GCA_000718305_01127
Unannotated protein.
 
  
 0.756
GCA_000718305_04494
Unannotated protein.
    
 0.755
GCA_000718305_04939
Unannotated protein.
       0.733
GCA_000718305_05504
Unannotated protein.
     
 0.702
GCA_000718305_01121
Unannotated protein.
  
  
  0.698
GCA_000718305_05316
Unannotated protein.
    
 0.684
GCA_000718305_04285
Unannotated protein.
  
  
  0.674
GCA_000718305_06866
Unannotated protein.
     
 0.643
GCA_000718305_04422
Unannotated protein.
  
  
  0.581
Your Current Organism:
Streptomyces niger
NCBI taxonomy Id: 66373
Other names: ATCC 17756, BCRC 11877, CBS 230.65, CBS 663.72, CCRC 11877, CCRC:11877, CMI 112787, CMI:112787, Chainia nigra, DSM 43049, IFO 13362, IFO 13902, ISP 5302, JCM 3158, KCC A-0158, NBRC 13362, NBRC 13902, NCIMB 10992, NRRL B-3857, NRRL-ISP 5302, PCM 2305, S. niger
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.