RR46_10813 protein (Papilio xuthus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RR46_10813

Protein takeout. (224 aa)

Predicted Functional Partners:

RR46_01224

0.718

RR46_01225

0.718

RR46_07070

0.691

RR46_04131

0.626

RR46_03164

0.603

RR46_00982

0.592

RR46_14206

0.583

RR46_05978

0.569

RR46_09079

0.552

RR46_02564

0.549

Your Current Organism:

Papilio xuthus

NCBI taxonomy Id: 66420
Other names: Asian swallowtail, Chinese swallowtail, Chinese yellow swallowtail, P. xuthus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RR46_00982	RR46_10813	A0A0N0P9W5	A0A194PKM4	Aladin.	Protein takeout.	0.592
RR46_00982	RR46_14206	A0A0N0P9W5	A0A194PPC4	Aladin.	Nuclear pore complex protein Nup214.	0.965
RR46_01224	RR46_01225	A0A0N0PA55	A0A0N0PAG7	Uncharacterized protein.	Leucine-rich repeat serine/threonine-protein kinase 1.	0.999
RR46_01224	RR46_02564	A0A0N0PA55	I4DIG2	Uncharacterized protein.	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	0.733
RR46_01224	RR46_05978	A0A0N0PA55	A0A194PMR8	Uncharacterized protein.	Ubiquitin-like protein Nedd8.	0.976
RR46_01224	RR46_10813	A0A0N0PA55	A0A194PKM4	Uncharacterized protein.	Protein takeout.	0.718
RR46_01225	RR46_01224	A0A0N0PAG7	A0A0N0PA55	Leucine-rich repeat serine/threonine-protein kinase 1.	Uncharacterized protein.	0.999
RR46_01225	RR46_02564	A0A0N0PAG7	I4DIG2	Leucine-rich repeat serine/threonine-protein kinase 1.	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	0.733
RR46_01225	RR46_05978	A0A0N0PAG7	A0A194PMR8	Leucine-rich repeat serine/threonine-protein kinase 1.	Ubiquitin-like protein Nedd8.	0.976
RR46_01225	RR46_10813	A0A0N0PAG7	A0A194PKM4	Leucine-rich repeat serine/threonine-protein kinase 1.	Protein takeout.	0.718
RR46_02564	RR46_01224	I4DIG2	A0A0N0PA55	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein.	0.733
RR46_02564	RR46_01225	I4DIG2	A0A0N0PAG7	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	Leucine-rich repeat serine/threonine-protein kinase 1.	0.733
RR46_02564	RR46_05978	I4DIG2	A0A194PMR8	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	Ubiquitin-like protein Nedd8.	0.931
RR46_02564	RR46_09079	I4DIG2	I4DIQ4	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	40S ribosomal protein S28.	0.999
RR46_02564	RR46_10813	I4DIG2	A0A194PKM4	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	Protein takeout.	0.549
RR46_03164	RR46_04131	A0A194Q771	A0A194QJB6	Yemanuclein-alpha.	Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.	0.989
RR46_03164	RR46_07070	A0A194Q771	A0A194Q648	Yemanuclein-alpha.	Histone chaperone asf1.	0.951
RR46_03164	RR46_10813	A0A194Q771	A0A194PKM4	Yemanuclein-alpha.	Protein takeout.	0.603
RR46_04131	RR46_03164	A0A194QJB6	A0A194Q771	Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.	Yemanuclein-alpha.	0.989
RR46_04131	RR46_07070	A0A194QJB6	A0A194Q648	Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.	Histone chaperone asf1.	0.998