RR46_09241 protein (Papilio xuthus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RR46_09241

Nuclear pore complex protein Nup160-like. (1312 aa)

Predicted Functional Partners:

RR46_11576

0.999

RR46_13424

0.998

RR46_08745

0.998

RR46_02703

0.998

RR46_09752

0.997

RR46_15268

0.995

RR46_08810

0.995

RR46_08809

0.995

RR46_06984

0.995

RR46_14943

0.994

Your Current Organism:

Papilio xuthus

NCBI taxonomy Id: 66420
Other names: Asian swallowtail, Chinese swallowtail, Chinese yellow swallowtail, P. xuthus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RR46_02703	RR46_06984	A0A194Q5N3	A0A194Q4W3	Nucleoporin Nup43.	Nuclear pore complex protein Nup98-Nup96.	0.996
RR46_02703	RR46_08745	A0A194Q5N3	A0A194PPB8	Nucleoporin Nup43.	Nuclear pore complex protein Nup133.	0.998
RR46_02703	RR46_08809	A0A194Q5N3	A0A194PW40	Nucleoporin Nup43.	Nuclear pore complex protein Nup205.	0.981
RR46_02703	RR46_08810	A0A194Q5N3	A0A194PPI3	Nucleoporin Nup43.	Nuclear pore complex protein Nup205.	0.982
RR46_02703	RR46_09241	A0A194Q5N3	A0A194PX43	Nucleoporin Nup43.	Nuclear pore complex protein Nup160-like.	0.998
RR46_02703	RR46_09752	A0A194Q5N3	A0A194QAU0	Nucleoporin Nup43.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.998
RR46_02703	RR46_11576	A0A194Q5N3	A0A194PSC0	Nucleoporin Nup43.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.999
RR46_02703	RR46_13424	A0A194Q5N3	A0A194PGP3	Nucleoporin Nup43.	Protein SEC13-like; Belongs to the WD repeat SEC13 family.	0.996
RR46_02703	RR46_14943	A0A194Q5N3	A0A194PFG3	Nucleoporin Nup43.	Nuclear pore complex protein Nup155.	0.994
RR46_02703	RR46_15268	A0A194Q5N3	A0A194PGD3	Nucleoporin Nup43.	Protein ELYS.	0.992
RR46_06984	RR46_02703	A0A194Q4W3	A0A194Q5N3	Nuclear pore complex protein Nup98-Nup96.	Nucleoporin Nup43.	0.996
RR46_06984	RR46_08745	A0A194Q4W3	A0A194PPB8	Nuclear pore complex protein Nup98-Nup96.	Nuclear pore complex protein Nup133.	0.998
RR46_06984	RR46_08809	A0A194Q4W3	A0A194PW40	Nuclear pore complex protein Nup98-Nup96.	Nuclear pore complex protein Nup205.	0.973
RR46_06984	RR46_08810	A0A194Q4W3	A0A194PPI3	Nuclear pore complex protein Nup98-Nup96.	Nuclear pore complex protein Nup205.	0.981
RR46_06984	RR46_09241	A0A194Q4W3	A0A194PX43	Nuclear pore complex protein Nup98-Nup96.	Nuclear pore complex protein Nup160-like.	0.995
RR46_06984	RR46_09752	A0A194Q4W3	A0A194QAU0	Nuclear pore complex protein Nup98-Nup96.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.998
RR46_06984	RR46_11576	A0A194Q4W3	A0A194PSC0	Nuclear pore complex protein Nup98-Nup96.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.998
RR46_06984	RR46_13424	A0A194Q4W3	A0A194PGP3	Nuclear pore complex protein Nup98-Nup96.	Protein SEC13-like; Belongs to the WD repeat SEC13 family.	0.998
RR46_06984	RR46_14943	A0A194Q4W3	A0A194PFG3	Nuclear pore complex protein Nup98-Nup96.	Nuclear pore complex protein Nup155.	0.998
RR46_06984	RR46_15268	A0A194Q4W3	A0A194PGD3	Nuclear pore complex protein Nup98-Nup96.	Protein ELYS.	0.992