STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000719265_01144Unannotated protein. (171 aa)    
Predicted Functional Partners:
GCA_000719265_01142
Unannotated protein.
       0.730
GCA_000719265_01141
Unannotated protein.
       0.690
GCA_000719265_01145
Unannotated protein.
 
     0.613
GCA_000719265_02620
Unannotated protein.
  
     0.599
GCA_000719265_04164
Unannotated protein.
  
     0.587
GCA_000719265_02208
Unannotated protein.
  
     0.551
GCA_000719265_00720
Unannotated protein.
  
     0.527
GCA_000719265_05263
Unannotated protein.
  
     0.524
GCA_000719265_02321
Unannotated protein.
  
     0.512
GCA_000719265_04801
Unannotated protein.
  
     0.503
Your Current Organism:
Streptomyces roseoverticillatus
NCBI taxonomy Id: 66429
Other names: ATCC 19807, ATCC 23654 [[Streptomyces baldaccii]], ATCC 51269 [[Streptomyces spitsbergensis]], Actinomyces biverticillatus, CBS 560.68, CECT 3269, DSM 40039, IFO 12817, IFO 14693 [[Streptomyces baldaccii]], IFO 15745 [[Streptomyces spitsbergensis]], IFO 3844, ISP 5039, JCM 4103, JCM 4272 [[Streptomyces baldaccii]], JCM 4607, JCM 8881 [[Streptomyces spitsbergensis]], NBRC 12817, NBRC 14693 [[Streptomyces baldaccii]], NBRC 15745 [[Streptomyces spitsbergensis]], NBRC 3844, NRRL B-24285 [[Streptomyces spitsbergensis]], NRRL B-3500 [[Streptomyces baldaccii]], NRRL-ISP 5039, NRRL-ISP:5039, NRRL:B:24285 [[Streptomyces spitsbergensis]], NRRL:B:3500 [[Streptomyces baldaccii]], PCM 2248, PCM 2404 [[Streptomyces spitsbergensis]], PCM:2404 [[Streptomyces spitsbergensis]], RIA 552, S. roseoverticillatus, Streptomyces baldacci, Streptomyces baldaccii, Streptomyces biverticillatus, Streptomyces fervens, Streptomyces roseiverticillatus, Streptomyces spitsbergensis, Streptoverticillium baldacci, Streptoverticillium baldaccii, Streptoverticillium baldacii, Streptoverticillium biverticillatum, Streptoverticillium biverticillatus, Streptoverticillium fervens, Streptoverticillium roseiverticillatum, Streptoverticillium roseoverticillatum, UNIQEM 194, VKM Ac-880, VKM:Ac:880, Verticillomyces roseoverticillatus
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.