KMO96429.1 protein (Streptomyces roseus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KMO96429.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (391 aa)

Predicted Functional Partners:

KMO98329.1

0.749

KMO95770.1

0.731

KMO99257.1

0.730

KMO96190.1

0.711

KMO97404.1

0.709

KMO96958.1

0.707

KMO98027.1

0.701

KMO97701.1

0.701

KMO95928.1

0.701

KMO96999.1

0.698

Your Current Organism:

Streptomyces roseus

NCBI taxonomy Id: 66430

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KMO95770.1	KMO96190.1	ACS04_21330	ACS04_19520	Iron-sulfur protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.638
KMO95770.1	KMO96429.1	ACS04_21330	ACS04_17455	Iron-sulfur protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.731
KMO95770.1	KMO96999.1	ACS04_21330	ACS04_15090	Iron-sulfur protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.656
KMO95770.1	KMO97404.1	ACS04_21330	ACS04_12950	Iron-sulfur protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.595
KMO95770.1	KMO97701.1	ACS04_21330	ACS04_11010	Iron-sulfur protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.710
KMO95770.1	KMO98027.1	ACS04_21330	ACS04_09820	Iron-sulfur protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.710
KMO95770.1	KMO98329.1	ACS04_21330	ACS04_08200	Iron-sulfur protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.765
KMO95770.1	KMO99257.1	ACS04_21330	ACS04_03415	Iron-sulfur protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase M6; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.733
KMO95928.1	KMO96190.1	ACS04_20975	ACS04_19520	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.730
KMO95928.1	KMO96429.1	ACS04_20975	ACS04_17455	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.701
KMO95928.1	KMO96999.1	ACS04_20975	ACS04_15090	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.659
KMO95928.1	KMO97404.1	ACS04_20975	ACS04_12950	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.748
KMO95928.1	KMO97701.1	ACS04_20975	ACS04_11010	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.725
KMO95928.1	KMO98027.1	ACS04_20975	ACS04_09820	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.457
KMO95928.1	KMO98329.1	ACS04_20975	ACS04_08200	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.483
KMO95928.1	KMO99257.1	ACS04_20975	ACS04_03415	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase M6; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.511
KMO96190.1	KMO95770.1	ACS04_19520	ACS04_21330	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron-sulfur protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.638
KMO96190.1	KMO95928.1	ACS04_19520	ACS04_20975	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.730
KMO96190.1	KMO96429.1	ACS04_19520	ACS04_17455	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.711
KMO96190.1	KMO96999.1	ACS04_19520	ACS04_15090	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773