STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KUP96988.1LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (115 aa)    
Predicted Functional Partners:
KUP97014.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.974
KUP96386.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.974
KUP96985.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.951
KUP97740.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.795
KUP96347.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.783
KUP95345.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.663
KUP98420.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.561
KUP97203.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.552
KUP96986.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.503
KUP96987.1
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.503
Your Current Organism:
Thermobifida cellulosilytica
NCBI taxonomy Id: 665004
Other names: T. cellulosilytica TB100, Thermobifida cellulosilytica DSM 44535, Thermobifida cellulosilytica TB100, Thermobifida cellulosilytica str. TB100, Thermobifida cellulosilytica strain TB100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.