STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gvpAGas vesicle synthesis-like protein; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure. (140 aa)    
Predicted Functional Partners:
AKJ09642.1
Gas vesicle protein.
 
   
 0.980
AKJ09636.1
Gas vesicle protein.
 
   
 0.974
AKJ09635.1
Gas vesicle protein.
 
   
 0.973
AKJ09644.1
Gas vesicle protein.
 
   
 0.971
AKJ09638.1
Gas vesicle protein GvpJ; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth.
 
   
 0.969
AKJ09637.1
Gas vesicle protein.
 
   
 0.965
AKJ09641.1
Gas vesicle protein.
 
   
 0.962
AKJ09639.1
Cyclase.
 
     0.956
AKJ09640.1
Primase.
 
     0.951
AKJ09645.1
ATP-dependent DNA ligase.
       0.710
Your Current Organism:
Streptomyces incarnatus
NCBI taxonomy Id: 665007
Other names: S. incarnatus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.