AKJ09907.1 protein (Streptomyces incarnatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AKJ09907.1

Flavin-nucleotide-binding protein. (224 aa)

Predicted Functional Partners:

AKJ09906.1

0.653

AKJ09908.1

0.527

AKJ13818.1

0.497

AKJ10562.1

0.476

Your Current Organism:

Streptomyces incarnatus

NCBI taxonomy Id: 665007
Other names: S. incarnatus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKJ09906.1	AKJ09907.1	ABB07_07685	ABB07_07690	Radical SAM protein.	Flavin-nucleotide-binding protein.	0.653
AKJ09906.1	AKJ09908.1	ABB07_07685	ABB07_07695	Radical SAM protein.	FAD-binding protein.	0.505
AKJ09907.1	AKJ09906.1	ABB07_07690	ABB07_07685	Flavin-nucleotide-binding protein.	Radical SAM protein.	0.653
AKJ09907.1	AKJ09908.1	ABB07_07690	ABB07_07695	Flavin-nucleotide-binding protein.	FAD-binding protein.	0.527
AKJ09907.1	AKJ10562.1	ABB07_07690	ABB07_11200	Flavin-nucleotide-binding protein.	Phosphomethylpyrimidine kinase.	0.476
AKJ09907.1	AKJ13818.1	ABB07_07690	ABB07_28400	Flavin-nucleotide-binding protein.	Proteasome protein.	0.497
AKJ09908.1	AKJ09906.1	ABB07_07695	ABB07_07685	FAD-binding protein.	Radical SAM protein.	0.505
AKJ09908.1	AKJ09907.1	ABB07_07695	ABB07_07690	FAD-binding protein.	Flavin-nucleotide-binding protein.	0.527
AKJ10562.1	AKJ09907.1	ABB07_11200	ABB07_07690	Phosphomethylpyrimidine kinase.	Flavin-nucleotide-binding protein.	0.476
AKJ13818.1	AKJ09907.1	ABB07_28400	ABB07_07690	Proteasome protein.	Flavin-nucleotide-binding protein.	0.497