STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ11784.1RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (195 aa)    
Predicted Functional Partners:
AKJ14290.1
RNA polymerase subunit sigma-70; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.801
AKJ09043.1
Sigma subunit sigma24; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.792
AKJ11785.1
Hypothetical protein.
       0.768
AKJ10986.1
RNA polymerase sigma factor SigE; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.724
AKJ11171.1
RNA polymerase; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.723
AKJ11783.1
ABC transporter substrate-binding protein.
  
    0.709
AKJ14128.1
RNA polymerase sigma factor SigK; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.692
AKJ11308.1
RNA polymerase sigma factor SigD; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.686
AKJ11656.1
RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.675
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.669
Your Current Organism:
Streptomyces incarnatus
NCBI taxonomy Id: 665007
Other names: S. incarnatus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.