STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ14247.1C4-dicarboxylate ABC transporter. (387 aa)    
Predicted Functional Partners:
AKJ14248.1
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.747
AKJ12575.1
Phosphofructokinase; Belongs to the carbohydrate kinase PfkB family.
   
    0.497
AKJ10955.1
ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
   
    0.447
AKJ13483.1
Hypothetical protein.
   
    0.447
Your Current Organism:
Streptomyces incarnatus
NCBI taxonomy Id: 665007
Other names: S. incarnatus
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