STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ15280.1AMP-dependent synthetase. (497 aa)    
Predicted Functional Partners:
AKJ15595.1
Polyketide synthase.
 
 0.969
AKJ14568.1
Hypothetical protein.
  
 0.943
AKJ10255.1
Hypothetical protein.
 
 0.939
AKJ09716.1
Hypothetical protein.
 
 0.931
AKJ09717.1
Hypothetical protein.
 
0.923
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.847
AKJ09715.1
Hypothetical protein.
 
 
  0.842
AKJ15509.1
Peptide synthetase.
 
0.774
AKJ10370.1
Histidine kinase.
    
 0.772
AKJ09415.1
3-hydroxyacyl-CoA dehydrogenase.
  
 0.767
Your Current Organism:
Streptomyces incarnatus
NCBI taxonomy Id: 665007
Other names: S. incarnatus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.