STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yijDInner membrane protein yijD; Protein of unknown function DUF1422, Protein of unknown function (DUF1422). (117 aa)    
Predicted Functional Partners:
yijC
HTH-type transcriptional repressor fabR; Represses the transcription of fabB, involved in unsaturated fatty acid (UFA) biosynthesis. By controlling UFA production, FabR directly influences the physical properties of the membrane bilayer.
  
    0.921
yafA
Esterase yafA; Protein of unknown function DUF1100, hydrolase-like, Alpha/beta hydrolase of unknown function (DUF1100); Belongs to the UPF0255 family.
  
     0.773
yfhB
Uncharacterized protein yfhB; HAD-superfamily hydrolase, subfamily IF, YfhB, YfhB_g-proteo: HAD superfamily (subfamily IF) hydrolase, YfhB.
  
     0.756
yggN
Uncharacterized protein yggN.
  
     0.753
yniB
Uncharacterized protein yniB.
  
     0.745
yihD
Uncharacterized protein HI0845 (ORF1); Protein of unknown function DUF1040, Protein of unknown function (DUF1040).
  
     0.743
ybfA
Uncharacterized protein ybfA precursor.
  
     0.737
yecM
Protein of unknown function DUF991, YecM protein.
  
     0.737
ytfK
Uncharacterized protein ytfK; Protein of unknown function DUF1107, Protein of unknown function (DUF1107).
  
     0.734
yafD
UPF0294 protein yafD; Endonuclease/exonuclease/phosphatase, Endonuclease/Exonuclease/phosphatase family.
  
     0.729
Your Current Organism:
Erwinia amylovora
NCBI taxonomy Id: 665029
Other names: E. amylovora CFBP1430, Erwinia amylovora CFBP1430, Erwinia amylovora str. CFBP1430, Erwinia amylovora strain CFBP1430
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.