STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
basSTwo-component sensor kinase; Histidine kinase, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (351 aa)    
Predicted Functional Partners:
basR
Probable transcriptional regulator ycf27 (OmpR-like protein), CheY-like, Response regulator receiver domain, cztR_silR_copR: heavy metal response regulator.
 
 0.996
barA
Sensor histidine kinase/response regulator; Signal transduction histidine-protein kinase barA, Histidine kinase, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, phoR_proteo: phosphate regulon sensor kinase PhoR.
 
 
0.954
arcB
Aerobic respiration control hybrid signal transduction histidine kinase ArcB, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, sensory_box: PAS domain S-box.
 
 
0.946
phoP
Response regulator phoP; Phosphate regulon transcriptional regulatory protein PhoB.
 
 
 0.826
cpxR1
Alkaline phosphatase synthesis transcriptional regulatory protein phoP; CheY-like, Response regulator receiver domain, PhoB: phosphate regulon transcriptional regulatory protein PhoB.
 
 
 0.823
cpxR3
Sensory transduction protein regX3; CheY-like, Response regulator receiver domain, PhoB: phosphate regulon transcriptional regulatory protein PhoB.
 
 
 0.814
baeR
Probable transcriptional regulator ycf27 (OmpR-like protein), CheY-like, Response regulator receiver domain, PhoB: phosphate regulon transcriptional regulatory protein PhoB.
 
 
 0.813
dacB
Penicillin-binding protein 4 precursor (PBP-4) [Includes: D-alanyl-D-alanine carboxypeptidase (DD-peptidase) (DD-carboxypeptidase); D-alanyl-D-alanine-endopeptidase (DD-endopeptidase)], Beta-lactamase-type transpeptidase fold, D-Ala-D-Ala carboxypeptidase 3 (S13) family, PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase.
  
    0.786
kdpE
Transcriptional regulatory protein kdpE; Response regulator receiver domain, two-component response regulator of kdp operon.
 
 
 0.780
rstA
Probable transcriptional regulator ycf27 (OmpR-like protein), CheY-like, Response regulator receiver domain, PhoB: phosphate regulon transcriptional regulatory protein PhoB.
 
 
 0.776
Your Current Organism:
Erwinia amylovora
NCBI taxonomy Id: 665029
Other names: E. amylovora CFBP1430, Erwinia amylovora CFBP1430, Erwinia amylovora str. CFBP1430, Erwinia amylovora strain CFBP1430
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