STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
orgAOxygen-regulated invasion protein orgA. (176 aa)    
Predicted Functional Partners:
EAMY_1572
Hypothetical protein predicted by Glimmer/Critica.
       0.790
prgK3
Lipoprotein PrgK precursor; III_secr_YscJ: type III secretion apparatus lipoprotein, YscJ/HrcJ/FliF family. Contains a possible N-terminal signal sequence. Pathogenicity 1 island effector protein.
       0.778
EAMY_1571
Hypothetical protein predicted by Glimmer/Critica.
       0.773
prgJ3
Type III secretion system protein PrgJ; Pathogenicity 1 island effector protein, probable signal peptide.
       0.768
sipD3
Cell invasion protein sipD (Salmonella invasion protein D), Invasion plasmid antigen IpaD.
     
 0.720
sipD1
Cell invasion protein sipD (Salmonella invasion protein D), Invasion plasmid antigen IpaD.
      
 0.684
kdsB
CTP:CMP-3-deoxy-D-manno-octulosonatetransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.
      
 0.684
prgH3
Type III secretion system protein PrgH/EprH. Contains a possible N-terminal signal sequence.
       0.425
Your Current Organism:
Erwinia amylovora
NCBI taxonomy Id: 665029
Other names: E. amylovora CFBP1430, Erwinia amylovora CFBP1430, Erwinia amylovora str. CFBP1430, Erwinia amylovora strain CFBP1430
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.