STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spaM3Hypothetical protein predicted by Glimmer/Critica; Remote match with Salmonella enterica secretory protein SpaM (associated with virulence). Gene position corresponds. (156 aa)    
Predicted Functional Partners:
spaN3
Hypothetical protein predicted by Glimmer/Critica; Remote match with Salmonella enterica secretory protein SpaN (associated with virulence). Gene position corresponds.
       0.789
spaO3
Surface presentation of antigens protein SpaO; Belongs to the fliN/mopA/spaO family.
       0.789
spaI3
Type III secretion system ATPase SpaI/InvC; ATP synthase subunit alpha (ATPase subunit alpha) (ATP synthase F1 sector subunit alpha), Type III secretion system ATPase, FliI/YscN.
       0.785
spaP3
Surface presentation of antigens protein SpaP; yscR: type III secretion apparatus protein, YscR/HrcR family. Similar to flagellar FliP protein. Possible N-term signal sequence.
       0.781
spaQ3
Surface presentation of antigens protein spaQ; fliQ_rel_III: type III secretion protein, HrpO family.
       0.773
invB
Surface presentation of antigens, secretory protein invB.
       0.758
spaR3
Surface presentation of antigens protein SpaR; fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT.
       0.746
invA3
Type III secretion system protein InvA, FHIPEP family, HrcV/FlhA family.
       0.735
spaS3
Surface presentation of antigens protein SpaS; Type III secretion protein HrpY/HrcU FlhB HrpN YscU SpaS Family FlhB_rel_III: type III secretion protein, YscU/HrpY family.Possible N-term signal sequence.
       0.711
invF3
Type III secretion system transcriptional regulator InvF; invF/bsaN, possible AraC-type DNA-binding domain-containing protein.
       0.621
Your Current Organism:
Erwinia amylovora
NCBI taxonomy Id: 665029
Other names: E. amylovora CFBP1430, Erwinia amylovora CFBP1430, Erwinia amylovora str. CFBP1430, Erwinia amylovora strain CFBP1430
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