STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ompWOuter membrane protein, OmpW, The Bacterial Porin, OmpW Family, TC 1.B.39.1.1 Outer membrane protein W precursor. (210 aa)    
Predicted Functional Partners:
hemN
Oxygen-independent coproporphyrinogen III oxidase (Coproporphyrinogenase) (Coprogen oxidase); Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
  
 0.857
tsx
Nucleoside-specific channel-forming protein, Tsx, TC 1.B.10.1.1 Nucleoside-specific channel-forming protein tsx.
      
 0.764
ompX
Outer membrane protein ompX, TC 1.B.6.2.1 Outer membrane protein X.
   
  
 0.527
yggW
Putative oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
  
 0.508
fnr
Fumarate and nitrate reduction regulatory protein; RmlC-like jelly roll fold, Cyclic nucleotide-binding domain.
 
  
 0.464
ydaA
Universal stress protein E; Rossmann-like alpha/beta/alpha sandwich fold, Universal stress protein family.
 
  
 0.445
dksA
DnaK suppressor protein; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression.
   
  
 0.415
EAMY_2267
Uncharacterized protease yegQ; Peptidase U32.
  
    0.411
yegQ
Uncharacterized protease yegQ.
  
    0.411
Your Current Organism:
Erwinia amylovora
NCBI taxonomy Id: 665029
Other names: E. amylovora CFBP1430, Erwinia amylovora CFBP1430, Erwinia amylovora str. CFBP1430, Erwinia amylovora strain CFBP1430
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