oppD1 protein (Erwinia amylovora) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

oppD1

ATP-binding protein of oligopeptide ABC transport system, TC 3.A.1.5.1 Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily. (338 aa)

Predicted Functional Partners:

oppC1

0.998

oppB1

0.998

oppF

0.993

oppA1

0.988

oppA3

0.984

mppA

0.975

ophC

0.970

dppC1

0.968

yliD

0.937

dppC3

0.893

Your Current Organism:

Erwinia amylovora

NCBI taxonomy Id: 665029
Other names: E. amylovora CFBP1430, Erwinia amylovora CFBP1430, Erwinia amylovora str. CFBP1430, Erwinia amylovora strain CFBP1430

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
dppC1	mppA	EAMY_0905	EAMY_1868	Binding-protein-dependent transport systems inner membrane component, TC 3.A.1.5.-The Peptide/Opine/Nickel Uptake Transporter (PepT) Family.	Bacterial extracellular solute-binding protein, family 5, TC 3.A.1.5.1 Periplasmic murein peptide-binding protein precursor.	0.433
dppC1	oppA1	EAMY_0905	EAMY_1937	Binding-protein-dependent transport systems inner membrane component, TC 3.A.1.5.-The Peptide/Opine/Nickel Uptake Transporter (PepT) Family.	Bacterial extracellular solute-binding protein, family 5, TC 3.A.1.5.1 Periplasmic oligopeptide-binding protein precursor.	0.414
dppC1	oppA3	EAMY_0905	EAMY_1938	Binding-protein-dependent transport systems inner membrane component, TC 3.A.1.5.-The Peptide/Opine/Nickel Uptake Transporter (PepT) Family.	Bacterial extracellular solute-binding protein, family 5, TC 3.A.1.5.1 Periplasmic oligopeptide-binding protein precursor.	0.459
dppC1	oppB1	EAMY_0905	EAMY_1936	Binding-protein-dependent transport systems inner membrane component, TC 3.A.1.5.-The Peptide/Opine/Nickel Uptake Transporter (PepT) Family.	Binding-protein-dependent transport systems inner membrane component, TC 3.A.1.5.1 Oligopeptide transport system permease protein OppB.	0.844
dppC1	oppD1	EAMY_0905	EAMY_1934	Binding-protein-dependent transport systems inner membrane component, TC 3.A.1.5.-The Peptide/Opine/Nickel Uptake Transporter (PepT) Family.	ATP-binding protein of oligopeptide ABC transport system, TC 3.A.1.5.1 Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.	0.968
dppC1	oppF	EAMY_0905	EAMY_1933	Binding-protein-dependent transport systems inner membrane component, TC 3.A.1.5.-The Peptide/Opine/Nickel Uptake Transporter (PepT) Family.	ATP-binding protein of oligopeptide ABC transport system, TC 3.A.1.5.1 Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.	0.933
dppC3	mppA	EAMY_3611	EAMY_1868	Binding-protein-dependent transport systems inner membrane component, TC 3.A.1.5.-The Peptide/Opine/Nickel Uptake Transporter (PepT) Family.	Bacterial extracellular solute-binding protein, family 5, TC 3.A.1.5.1 Periplasmic murein peptide-binding protein precursor.	0.441
dppC3	oppA1	EAMY_3611	EAMY_1937	Binding-protein-dependent transport systems inner membrane component, TC 3.A.1.5.-The Peptide/Opine/Nickel Uptake Transporter (PepT) Family.	Bacterial extracellular solute-binding protein, family 5, TC 3.A.1.5.1 Periplasmic oligopeptide-binding protein precursor.	0.417
dppC3	oppA3	EAMY_3611	EAMY_1938	Binding-protein-dependent transport systems inner membrane component, TC 3.A.1.5.-The Peptide/Opine/Nickel Uptake Transporter (PepT) Family.	Bacterial extracellular solute-binding protein, family 5, TC 3.A.1.5.1 Periplasmic oligopeptide-binding protein precursor.	0.448
dppC3	oppB1	EAMY_3611	EAMY_1936	Binding-protein-dependent transport systems inner membrane component, TC 3.A.1.5.-The Peptide/Opine/Nickel Uptake Transporter (PepT) Family.	Binding-protein-dependent transport systems inner membrane component, TC 3.A.1.5.1 Oligopeptide transport system permease protein OppB.	0.858
dppC3	oppD1	EAMY_3611	EAMY_1934	Binding-protein-dependent transport systems inner membrane component, TC 3.A.1.5.-The Peptide/Opine/Nickel Uptake Transporter (PepT) Family.	ATP-binding protein of oligopeptide ABC transport system, TC 3.A.1.5.1 Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.	0.893
dppC3	oppF	EAMY_3611	EAMY_1933	Binding-protein-dependent transport systems inner membrane component, TC 3.A.1.5.-The Peptide/Opine/Nickel Uptake Transporter (PepT) Family.	ATP-binding protein of oligopeptide ABC transport system, TC 3.A.1.5.1 Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.	0.844
mppA	dppC1	EAMY_1868	EAMY_0905	Bacterial extracellular solute-binding protein, family 5, TC 3.A.1.5.1 Periplasmic murein peptide-binding protein precursor.	Binding-protein-dependent transport systems inner membrane component, TC 3.A.1.5.-The Peptide/Opine/Nickel Uptake Transporter (PepT) Family.	0.433
mppA	dppC3	EAMY_1868	EAMY_3611	Bacterial extracellular solute-binding protein, family 5, TC 3.A.1.5.1 Periplasmic murein peptide-binding protein precursor.	Binding-protein-dependent transport systems inner membrane component, TC 3.A.1.5.-The Peptide/Opine/Nickel Uptake Transporter (PepT) Family.	0.441
mppA	oppA1	EAMY_1868	EAMY_1937	Bacterial extracellular solute-binding protein, family 5, TC 3.A.1.5.1 Periplasmic murein peptide-binding protein precursor.	Bacterial extracellular solute-binding protein, family 5, TC 3.A.1.5.1 Periplasmic oligopeptide-binding protein precursor.	0.905
mppA	oppA3	EAMY_1868	EAMY_1938	Bacterial extracellular solute-binding protein, family 5, TC 3.A.1.5.1 Periplasmic murein peptide-binding protein precursor.	Bacterial extracellular solute-binding protein, family 5, TC 3.A.1.5.1 Periplasmic oligopeptide-binding protein precursor.	0.906
mppA	oppB1	EAMY_1868	EAMY_1936	Bacterial extracellular solute-binding protein, family 5, TC 3.A.1.5.1 Periplasmic murein peptide-binding protein precursor.	Binding-protein-dependent transport systems inner membrane component, TC 3.A.1.5.1 Oligopeptide transport system permease protein OppB.	0.984
mppA	oppC1	EAMY_1868	EAMY_1935	Bacterial extracellular solute-binding protein, family 5, TC 3.A.1.5.1 Periplasmic murein peptide-binding protein precursor.	Binding-protein-dependent transport systems inner membrane component, TC 3.A.1.5.1 Oligopeptide transport system permease protein oppC.	0.981
mppA	oppD1	EAMY_1868	EAMY_1934	Bacterial extracellular solute-binding protein, family 5, TC 3.A.1.5.1 Periplasmic murein peptide-binding protein precursor.	ATP-binding protein of oligopeptide ABC transport system, TC 3.A.1.5.1 Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.	0.975
mppA	oppF	EAMY_1868	EAMY_1933	Bacterial extracellular solute-binding protein, family 5, TC 3.A.1.5.1 Periplasmic murein peptide-binding protein precursor.	ATP-binding protein of oligopeptide ABC transport system, TC 3.A.1.5.1 Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.	0.977

page 1 of 5

Server load: low (22%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About