STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fliA1RNA polymerase sigma factor FliA/RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily. (240 aa)    
Predicted Functional Partners:
flgM
Negative regulator of flagellin synthesis (Anti-sigma-28 factor).
 
 0.990
fFlgM
Negative regulator of flagellin synthesis (Anti-sigma-28 factor).
  
 0.981
fliZ
Protein FliZ; Putative alternative sigma factor regulatory protein.
  
  
 0.971
flgB1
Flagellar basal-body rod protein flgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
 
 
 0.916
flgK1
Flagellar hook-filament junction protein 1; flgK_ends: flagellar hook-associated protein FlgK.
 
  
 0.913
flgK3
Flagellar hook-filament junction protein 1; flgK_ends: flagellar hook-associated protein FlgK.
 
  
 0.905
fliA3
RNA polymerase sigma factor FliA/RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily.
  
  
 
0.904
flgD1
Basal-body rod modification protein flgD; Required for flagellar hook formation. May act as a scaffolding protein.
 
  
 0.898
flgC1
Flagellar basal-body rod protein flgC; Belongs to the flagella basal body rod proteins family.
 
 
 0.885
flgC3
Flagellar basal-body rod protein flgC; Belongs to the flagella basal body rod proteins family.
 
 
 0.884
Your Current Organism:
Erwinia amylovora
NCBI taxonomy Id: 665029
Other names: E. amylovora CFBP1430, Erwinia amylovora CFBP1430, Erwinia amylovora str. CFBP1430, Erwinia amylovora strain CFBP1430
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.