Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ada | nfo | EAMY_1179 | EAMY_2302 | DNA methylation and regulatory protein; Putative regulatory protein ada (Regulatory protein of adaptative response) [Includes: Methylated-DNA-protein-cysteine methyltransferase (O-6-methylguanine-DNA alkyltransferase)], DNA glycosylase, AlkA N-terminal domain. | Endonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. | 0.482 |
| ada | nth | EAMY_1179 | EAMY_1716 | DNA methylation and regulatory protein; Putative regulatory protein ada (Regulatory protein of adaptative response) [Includes: Methylated-DNA-protein-cysteine methyltransferase (O-6-methylguanine-DNA alkyltransferase)], DNA glycosylase, AlkA N-terminal domain. | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.476 |
| ada | xthA | EAMY_1179 | EAMY_1966 | DNA methylation and regulatory protein; Putative regulatory protein ada (Regulatory protein of adaptative response) [Includes: Methylated-DNA-protein-cysteine methyltransferase (O-6-methylguanine-DNA alkyltransferase)], DNA glycosylase, AlkA N-terminal domain. | Exodeoxyribonuclease III (EXO III), Exodeoxyribonuclease III xth, Endonuclease/Exonuclease/phosphatase family, exoDNase_III: exodeoxyribonuclease III. | 0.926 |
| hisB | nfo | EAMY_2223 | EAMY_2302 | Histidine biosynthesis bifunctional protein hisB [Includes: Histidinol-phosphatase; Imidazoleglycerol-phosphate dehydratase (IGPD)]. | Endonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. | 0.415 |
| hisB | xthA | EAMY_2223 | EAMY_1966 | Histidine biosynthesis bifunctional protein hisB [Includes: Histidinol-phosphatase; Imidazoleglycerol-phosphate dehydratase (IGPD)]. | Exodeoxyribonuclease III (EXO III), Exodeoxyribonuclease III xth, Endonuclease/Exonuclease/phosphatase family, exoDNase_III: exodeoxyribonuclease III. | 0.553 |
| nfo | ada | EAMY_2302 | EAMY_1179 | Endonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. | DNA methylation and regulatory protein; Putative regulatory protein ada (Regulatory protein of adaptative response) [Includes: Methylated-DNA-protein-cysteine methyltransferase (O-6-methylguanine-DNA alkyltransferase)], DNA glycosylase, AlkA N-terminal domain. | 0.482 |
| nfo | hisB | EAMY_2302 | EAMY_2223 | Endonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. | Histidine biosynthesis bifunctional protein hisB [Includes: Histidinol-phosphatase; Imidazoleglycerol-phosphate dehydratase (IGPD)]. | 0.415 |
| nfo | nth | EAMY_2302 | EAMY_1716 | Endonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.680 |
| nfo | polB | EAMY_2302 | EAMY_2919 | Endonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. | DNA-directed DNA polymerase B. | 0.447 |
| nfo | sodA | EAMY_2302 | EAMY_3650 | Endonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. | Superoxide dismutase, manganese; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.492 |
| nfo | ung | EAMY_2302 | EAMY_2638 | Endonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. | uracil-DNA-glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.499 |
| nfo | xthA | EAMY_2302 | EAMY_1966 | Endonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. | Exodeoxyribonuclease III (EXO III), Exodeoxyribonuclease III xth, Endonuclease/Exonuclease/phosphatase family, exoDNase_III: exodeoxyribonuclease III. | 0.785 |
| nfo | yeiE | EAMY_2302 | EAMY_2300 | Endonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. | Probable RuBisCO transcriptional regulator; LysR, substrate-binding, LysR substrate binding domain; Belongs to the LysR transcriptional regulatory family. | 0.478 |
| nfo | yeiH | EAMY_2302 | EAMY_2301 | Endonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. | Putative PSE family transporter; Conserved hypothetical protein 698, The 10 TMS putative Sulfate Exporter (PSE) Family, TC 9.B.63.1.3 Hypothetical UPF0324 membrane protein yeiH; Belongs to the UPF0324 family. | 0.856 |
| nth | ada | EAMY_1716 | EAMY_1179 | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | DNA methylation and regulatory protein; Putative regulatory protein ada (Regulatory protein of adaptative response) [Includes: Methylated-DNA-protein-cysteine methyltransferase (O-6-methylguanine-DNA alkyltransferase)], DNA glycosylase, AlkA N-terminal domain. | 0.476 |
| nth | nfo | EAMY_1716 | EAMY_2302 | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | Endonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. | 0.680 |
| nth | ung | EAMY_1716 | EAMY_2638 | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | uracil-DNA-glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.695 |
| nth | xthA | EAMY_1716 | EAMY_1966 | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | Exodeoxyribonuclease III (EXO III), Exodeoxyribonuclease III xth, Endonuclease/Exonuclease/phosphatase family, exoDNase_III: exodeoxyribonuclease III. | 0.959 |
| polB | nfo | EAMY_2919 | EAMY_2302 | DNA-directed DNA polymerase B. | Endonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. | 0.447 |
| polB | xthA | EAMY_2919 | EAMY_1966 | DNA-directed DNA polymerase B. | Exodeoxyribonuclease III (EXO III), Exodeoxyribonuclease III xth, Endonuclease/Exonuclease/phosphatase family, exoDNase_III: exodeoxyribonuclease III. | 0.827 |
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