STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vgrG3Putative type VI secretion system, effector protein vgrG COG3501: Uncharacterized protein conserved in bacteria Protein of unknown function, DUF586 Rhs element Vgr protein. (654 aa)    
Predicted Functional Partners:
EAMY_3019
Putative type VI secretion system, effector protein hcp COG3157: Hemolysin-coregulated protein (uncharacterized) Protein of unknown function DUF796.
 
  
 0.944
EAMY_3021
Putative type VI secretion system, core protein COG3516: Uncharacterized protein conserved in bacteria Protein of unknown function (DUF770).
 
  
 0.939
EAMY_3022
Putative type VI secretion system, core protein COG3515: Uncharacterized protein conserved in bacteria ImpA-related N-terminal domain.
 
  
 0.938
EAMY_3006
Putative type VI secretion system, core protein COG3520: Uncharacterized protein conserved in bacteria Protein of unknown function DUF1305.
 
  
 0.929
clpV1
Putative type VI secretion system, core protein COG542: ATPases with chaperone activity, ATP-binding subunit ATPase family associated with various cellular activities (AAA); Belongs to the ClpA/ClpB family.
 
  
 0.897
EAMY_3025
Putative type VI secretion system, core protein: Uncharacterized protein conserved in bacteria DotU/IcmH-related TC 9.A.34.1.1, uncharacterized protein conserved in bacteria (DUF2077), hypothetical OmpA family protein.
 
  
 0.891
EAMY_3007
Putative type VI secretion system, core protein COG3519: Uncharacterized protein conserved in bacteria Bacterial protein of unknown function (DUF879).
 
  
 0.889
EAMY_1623
Uncharacterized protein conserved in bacteria (DUF2077), TC 9.A.34.-.-The putative Type VI Symbiosis/Virulence Secretory Pathway (VISP) Family.
 
  
 0.883
EAMY_3020
Putative type VI secretion system, core protein COG3517: Uncharacterized protein conserved in bacteria Protein of unknown function DUF877.
 
  
 0.880
EAMY_3228
Putative type VI secretion system, core protein COG3516: Uncharacterized protein conserved in bacteria Protein of unknown function (DUF770).
 
  
 0.879
Your Current Organism:
Erwinia amylovora
NCBI taxonomy Id: 665029
Other names: E. amylovora CFBP1430, Erwinia amylovora CFBP1430, Erwinia amylovora str. CFBP1430, Erwinia amylovora strain CFBP1430
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