STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAMY_3207Hypothetical protein. (141 aa)    
Predicted Functional Partners:
EAMY_3027
COG3521: Uncharacterized protein conserved in bacteria.
  
  
  0.929
EAMY_3212
Putative type VI secretion system, core protein COG3521.
  
  
 
0.900
EAMY_3202
Description putative type VI secretion system, core protein COG3518: Uncharacterized protein conserved in bacteria Protein of unknown function DUF1316 GPW/gp25 family protein.
 
  
 0.865
EAMY_3225
Putative type VI secretion system-associated hypothetical protein, Uncharacterized protein conserved in bacteria (DUF2077).
 
  
 0.857
EAMY_3214
Putative type VI secretion system, core protein COG3519: Uncharacterized protein conserved in bacteria Bacterial protein of unknown function (DUF879).
 
  
 0.836
EAMY_3213
Putative type VI secretion system, core protein COG3520: Uncharacterized protein conserved in bacteria Protein of unknown function DUF1305.
 
  
 0.823
EAMY_3215
Putative type VI secretion system, core protein COG3515: Uncharacterized protein conserved in bacteria ImpA-related N-terminal domain.
 
  
 0.816
EAMY_3226
Putative type VI secretion system, core protein COG3522: Uncharacterized protein conserved in bacteria Bacterial protein of unknown function (DUF876).
 
  
 0.815
EAMY_3206
Hypothetical protein predicted by Glimmer/Critica.
  
  
 0.807
hcp
Putative type VI secretion system, effector protein hcp COG3157: Hemolysin-coregulated protein (uncharacterized) Protein of unknown function DUF796.
 
  
 0.806
Your Current Organism:
Erwinia amylovora
NCBI taxonomy Id: 665029
Other names: E. amylovora CFBP1430, Erwinia amylovora CFBP1430, Erwinia amylovora str. CFBP1430, Erwinia amylovora strain CFBP1430
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