STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SS1G_03788CTLH domain-containing protein. (407 aa)    
Predicted Functional Partners:
SS1G_10220
Uncharacterized protein.
   
 
 0.991
SS1G_08381
Uncharacterized protein.
    
 
 0.980
SS1G_06314
CTLH domain-containing protein.
   
 0.966
SS1G_02224
HECT domain-containing protein.
   
  
 0.924
SS1G_07449
Uncharacterized protein.
    
 0.890
ssh4
Protein ssh4; Components of the endosome-vacuole trafficking pathway that regulates nutrient transport. May be involved in processes which determine whether plasma membrane proteins are degraded or routed to the plasma membrane (By similarity); Belongs to the SSH4 family.
   
 
 0.854
SS1G_12317
SPRY domain-containing protein.
   
 
 0.854
SS1G_01555
Uncharacterized protein.
    
 
 0.797
SS1G_05470
Yippee domain-containing protein.
   
 
 0.634
SS1G_06987
Protein yippee-like; Belongs to the yippee family.
   
 
 0.634
Your Current Organism:
Sclerotinia sclerotiorum
NCBI taxonomy Id: 665079
Other names: S. sclerotiorum 1980 UF-70, Sclerotinia sclerotiorum 1980 UF-70
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